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Tensor Denoising

Denoise neural signals using tensor decompositions.

Data format

Data should be formatted as an array Y that is size (N,T,C,R) where N is the number of neurons, T is the number of time points, C is the number of conditions, and R is the total number of trials. The fourth index should be padded with NaNs in cases where each neuron-condition pair did not see the same number of trials. Further, trial ordering conveys no meaning.

Main Files

  • tensorDenoiseGridSearchCV.m -- Finds the optimal tensor rank via grid search and leave-one-out cross-validation.
  • tensorDenoiseCluster.m -- A wrapper file to pass parameters through tensorDenoiseGridSearchCV.m.
  • tensorDenoiseERR.m -- Computes the relative error of tensor Yhat relative to Y.
  • tensorDenoiseDat2Plot.m -- Takes the output files from tensorDenoiseCluster.m and produces the cell array errPlot, which can be used to plot results.

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