saalfeldlab / bigcat-launch Goto Github PK
View Code? Open in Web Editor NEWStart bigCAT client, ID service and GALA
License: BSD 2-Clause "Simplified" License
Start bigCAT client, ID service and GALA
License: BSD 2-Clause "Simplified" License
Hey @axtimwalde!
I tried the launch script on a new machine, and get the following error:
Error: Could not find or load main class bdv.bigcat.BigCatRemoteClient
Here's the rest of the error message:
[INFO] Scanning for projects...
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building BIGCAT 0.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- build-helper-maven-plugin:1.9.1:regex-property (sanitize-version) @ bigcat ---
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ bigcat ---
[INFO] Executing: /bin/sh -c cd /Users/nuneziglesiasj/projects/bigcat-launch/bigcat && git rev-parse --verify HEAD
[INFO] Working directory: /Users/nuneziglesiasj/projects/bigcat-launch/bigcat
[INFO] Storing buildNumber: 50d658ae29c6b880605ec14cda1ab8eb07df1bb4 at timestamp: 1477028589896
[INFO] Storing buildScmBranch: remote-client
[INFO]
[INFO] --- scijava-maven-plugin:0.5.1:set-rootdir (set-rootdir) @ bigcat ---
[INFO] Setting rootdir: /Users/nuneziglesiasj/projects/bigcat-launch/bigcat
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ bigcat ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 7 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ bigcat ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ bigcat ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /Users/nuneziglesiasj/projects/bigcat-launch/bigcat/src/test/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ bigcat ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.17:test (default-test) @ bigcat ---
[INFO] Surefire report directory: /Users/nuneziglesiasj/projects/bigcat-launch/bigcat/target/surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running bdv.img.h5.H5UtilsTest
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.059 sec <<< FAILURE! - in bdv.img.h5.H5UtilsTest
bdv.img.h5.H5UtilsTest Time elapsed: 0.058 sec <<< ERROR!
java.io.IOException: Could not create test directory for HDF5Utils test.
at bdv.img.h5.H5UtilsTest.setUpBeforeClass(H5UtilsTest.java:68)
Running bdv.util.IdServiceTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.035 sec - in bdv.util.IdServiceTest
Running bdv.util.LocalIdServiceTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec - in bdv.util.LocalIdServiceTest
Results :
Tests in error:
H5UtilsTest.setUpBeforeClass:68 IO Could not create test directory for HDF5Uti...
Tests run: 3, Failures: 0, Errors: 1, Skipped: 0
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 2.519 s
[INFO] Finished at: 2016-10-21T16:43:11+11:00
[INFO] Final Memory: 23M/309M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.17:test (default-test) on project bigcat: There are test failures.
[ERROR]
[ERROR] Please refer to /Users/nuneziglesiasj/projects/bigcat-launch/bigcat/target/surefire-reports for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[INFO] Scanning for projects...
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building BIGCAT 0.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-dependency-plugin:2.8:build-classpath (default-cli) @ bigcat ---
[INFO] Skipped writing classpath file '/Users/nuneziglesiasj/projects/bigcat-launch/bigcat/cp.txt'. No changes found.
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 1.577 s
[INFO] Finished at: 2016-10-21T16:43:24+11:00
[INFO] Final Memory: 23M/309M
[INFO] ------------------------------------------------------------------------
Error: Could not find or load main class bdv.bigcat.BigCatRemoteClient
Any ideas? My Maven version is 3.3.9. I'm also using Oracle's JDK โ let me know if you think that could be the issue.
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