Comments (2)
samhunter
commented on July 30, 2024
Hi Hugo,
Thanks for your suggestion. I'm glad that HTStream has been useful for you, and thank you for acknowledging our hard work in making it available! Unfortunately we don't have a publication quite yet. Please just cite the GitHub page for now. I have updated the readme to reflect this, and also added a citation to an earlier implementation of the SuperDeduper algorithm.
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Tgrandis
commented on July 30, 2024
Hi Sam:
Thanks for the reaction. I appreciate that.
I will follow your suggestions when referencing the use of the
programme.
Greetings,
Hugo
…On 2021-09-19 12:34, Sam Hunter wrote:
Hi Hugo,
Thanks for your suggestion. I'm glad that HTStream has been useful for you, and thank you for acknowledging our hard work in making it available! Unfortunately we don't have a publication quite yet. Please just cite the GitHub page for now. I have updated the readme to reflect this, and also added a citation to an earlier implementation of the SuperDeduper algorithm.
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Hugo A. Volkaert
Center for Agricultural Biotechnology
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Related Issues (20)
- hts_SeqScreener enhancements for bigger references
- hts_Primer doesn't report fragments and basepairs_in
- Feature downgrade actually, remove -a option from SuperD
- -m (minLength) option removed from hts_QWindowTrim, but does not exist in hts_CutTrim HOT 3
- Flag use HOT 1
- Is "percentage-hits" calculated properly for SeqScreener? HOT 1
- SuperDeduper ignoring reads HOT 6
- hts_Primers doesn't seem to read multi-fasta files correctly
- hts_Primers - error message HOT 4
- Version incorrect and CMAKE_PREFIX_PATH not working HOT 5
- How to cite HTStream? :-) HOT 2
- hts_LengthFilter is missing from the documentation!
- Add to CutTrim, trim to length from 5' or 3'
- pointer error in hts_Stats HOT 1
- Compiling from source fails on Ubuntu 22.04.1 HOT 2
- Remaining adapter sequence
- Order of input files to hts_SeqScreener changes hits reported when R1/R2 lengths differ
- "no such file or directory" error HOT 2
- munmap_chunk(): invalid pointer error HOT 3
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