Comments (3)
Hi @marade, there is now a new tool called hts_LengthFilter (https://github.com/s4hts/HTStream/tree/master/hts_LengthFilter) to take care of this step.
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Ah good. Thanks for the assistance.
from htstream.
No problem, thanks for feedback!
The idea is that all length filtering can be handled by a single tool, so that statistics for this type of filtering are in the same place instead of spread across many different tools.
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Related Issues (20)
- Feature downgrade actually, remove -a option from SuperD
- Flag use HOT 1
- Is "percentage-hits" calculated properly for SeqScreener? HOT 1
- SuperDeduper ignoring reads HOT 6
- hts_Primers doesn't seem to read multi-fasta files correctly
- hts_Primers - error message HOT 4
- Version incorrect and CMAKE_PREFIX_PATH not working HOT 5
- How to cite HTStream? :-) HOT 2
- hts_LengthFilter is missing from the documentation!
- citation? HOT 2
- Add to CutTrim, trim to length from 5' or 3'
- pointer error in hts_Stats HOT 1
- Compiling from source fails on Ubuntu 22.04.1 HOT 2
- Remaining adapter sequence
- Order of input files to hts_SeqScreener changes hits reported when R1/R2 lengths differ
- "no such file or directory" error HOT 2
- munmap_chunk(): invalid pointer error HOT 3
- Issue in Common: Memory Leak in `check_open_r` (not closing file) HOT 2
- Mac version available on github, via Brew, and on bioconda is outdated
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