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germinate-vue

Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.

ggplot2-book

ggplot2: elegant graphics for data analysis

gimpute

An efficient genetic data imputation pipeline

gmat

govs

Genome optimization via virtual simulation

gs2020

gwas_scripts

Codebook from my GWAS cookbook

h5

Interface to the HDF5 Library

hapi

Chromosome-length haplotype inference using genotype data of single gamete cells

helium-docs

Documentation for the Helium pedigree visualization software

hpcc_modules

Modules for describing software environment on biocluster

htp

Haplotype-tag polymorphisms

ibcf.mtme

Item Based Collaborative Filtering For Multi-trait and Multi-environment Data [R Package - dev version]

iiivmrmlm

The R and C++ tools associated with 3VmrMLM, a comprehensive GWAS method for dissecting quantitative traits

in-depth-ngs-data-analysis-course

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

inspectdf

Tools for Exploring and Comparing Data Frames

intassoplot

intercross

intro-to-chipseq

Intro to ChIPseq using HPC

intro-to-r

intro-to-rnaseq-hpc-gt

Introduction to RNA-seq using HPC

intro-to-rnaseq-hpc-o2

This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster

intro-to-rnaseq-hpc-salmon

intro-to-shell

Introduction to the Unix shell

intro-to-unix-qmb

Workshop for Intro to Unix

introstatisticalgenetics

GitHub site to accompany Textbook Introduction to Statistical Genetic Data Analysis

inventory

kaml

:bicyclist: Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction

landgencourse

landscape_genetics_r_course

Swirl course on landscape genetic data analysis with R