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matspec's Introduction

matspec

matlab code from spectro preprocessing

_siemens dicom spectro read into matlab

_simple spectra preprocessing for single spectra acquisition (and also MEGA press): phase/frequency correction before summing

_ plot functions

_ lcmodel preparation of .CONTROL file

_ lcmodel results read to write csv output files

To have a first overview of command to use, read script exemple : doit.m

Unfurtunatly this is still a poorly documented code ...

matspec's People

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matspec's Issues

Cannot find LineShapeExtract.m

Hi Romain,

I'm an Assistant Professor at the University of Minnesota working with Gosia Marjanska. She recommended your Matlab software package for pre-processing 7T STEAM data for analysis in LCModel.

My issue is that when running the example "doit.m" code, Matlab is unable to find LineShapeExtract.m, despite having the matspec folder in my path (i.e., addpath(genpath('foo/matspec')) )

Here's the function I'm trying to run (line 103 in doit.m):

fwater = get_water_width(fwater);

And here's the error message:

Undefined function 'LineShapeExtract' for input arguments of type 'double'.
Error in get_water_width (line 27) [mConAmpCor mSPhase mT2used] = LineShapeExtract(ywat,sw);

Thanks for your help. Feel free to reach out to me directly for more information.

Best,
Michael-Paul Schallmo

Cannot find function 'complet_struct.m'

Hi Romain,

I am having an issue running processing_LCModel.m

When I get to line 8:
par = complet_struct(par,defpar);

I get the following error message:

Undefined function 'complet_struct' for input arguments of type 'struct'.
Error in processing_LCmodel (line 8)
par = complet_struct(par,defpar);

I believe this is a missing function. Please advise.

Thank you,
Michael-Paul

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