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Hi šŸ‘‹ ā€” I'm Rob

I lead the COMBINE-lab at the University of Maryland, where I am an associate professor of Computer Science and a member of UMIACS and the Center for Bioinformatics and Computational Biology. We (the COMBINE-lab) work mostly on algorithms and data structures for efficient processing, indexing, querying, and inference in high-throughput sequencing data.

Some Info

šŸŒ± Iā€™m currently learning Rust (and think it is a strong contender to replace / augment C++ in compute-intensive bioinformatics applications)!

šŸ‘Æ Iā€™m looking to collaborate on interesting projects related to processing, indexing, querying, and inference in high-throughput sequencing data (after all, it's what we do!).

Rob Patro's Projects

cmsc858d icon cmsc858d

Feature rich Jekyll template for academic course websites

concurrentqueue icon concurrentqueue

A fast multi-producer, multi-consumer lock-free concurrent queue for C++11

continuous_analysis icon continuous_analysis

Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.

course icon course

Source code for the applications presented in the course "Geometry Processing with Discrete Exterior Calculus"

cpp-peglib icon cpp-peglib

A single file C++ header-only PEG (Parsing Expression Grammars) library

cpp11fun icon cpp11fun

A small set of examples demonstrating features of C++11

cse373s19 icon cse373s19

Stony Brook University Analysis of Algorithms (Spring 2019)

daft icon daft

Render some probabilistic graphical models using matplotlib

dropletutils icon dropletutils

Clone of the Bioconductor repository for the DropletUtils package.

edlib icon edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

epi icon epi

A computer scientist's text editor.

facultyhiringpaper icon facultyhiringpaper

A repository to test out some thoughts / ideas related to the paper "Systematic inequality and hierarchy in faculty hiring networks"

fcseqtk icon fcseqtk

Fork of SeqTK adapted for FusionCatcher

fqfeeder icon fqfeeder

Self-contained, multi-threaded fasta/q parser

gccontent-benchmark icon gccontent-benchmark

Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)

gclib icon gclib

GCLib - Genomic C++ library of reusable code for bioinformatics projects

gfakluge icon gfakluge

A C++ library and utilities for manipulating the Graphical Fragment Assembly format.

ghost icon ghost

Global Network Alignment using Multiscale Spectral Signatures

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