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Code and submissions for 2017-2018 CDC flu prediction contest
something went wrong in Region 6. Our models said week 2 was peak, CDC said week 52 was peak. baseline was 4.1. EW52 observation was 4.19, EW01 observation was 4.07, others were clearly above 4.1.
at least for prospective-prediction years, predictions only use data actually observed by prediction date
do this in the function that downloads and cleans data so that we have a standard name for the region
some time after most backfill for the season has completed and before making predictions for that season, update data for the 2016-2017 season. when this is done, care should be exercised not to overwrite/replace data for preceeding seasons, which will have already been used to fit models.
In addition to LOSO fits training phase (everything but last 7 years), update fits for all component and ensemble models after each prospective-prediction year
e.g. get_onset_baseline() has this.
returning a lot of "none" onsets... need to check.
Not sure if this is intentional, but pretty sure that the code at
2017-2018-cdc-flu-contest/R/kde-utils.R
Line 134 in c06d018
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