View Code? Open in Web Editor NEW

Python 6.56% Java 74.70% JavaScript 1.52% HTML 7.30% CSS 0.55% HCL 1.27% Shell 5.12% API Blueprint 2.98%

disk's Introduction

DISK

Installation

Clone the repository https://github.com/IKCAP/DISK.git

git clone https://github.com/IKCAP/DISK.git

Setup

2.1 For Development

python setup.py develop

2.1 For Installation

python setup.py install

Configuring

Create a file .labkey-config.txt, with 4 entries

[default]

; URL of Labkey server; including the context path
base-url     = https://example.domain.com:8443/labkey

; Labkey credentials
username     = <username>

; Labkey credentials
password     = <password>

; Labkey project name
project-name = <project>

The tool loads configuration in following order

From .labkey-config.txt file in the user's home directory
.labkey-config.txt file in current directory.
File passed as through the command line's --config option.
Command line arguments for each option.

MS2 Analysis Configuration

In .labkey-config.txt, add a section as follows

[ms2]

; Default search engine to use
search-engine     = <search-engine>

; Server directory where the input file should be uploaded
input-location    = <input-locaiton>

; Server directory where the FASTA file should be uploaded
fasta-location    = <fasta-file-locaiton>

; Server directory where the protocol file should be uploaded
; DO NOT CHANGE THIS
protocol-location = .labkey/protocols/%(search-engine)s/

Recommend Projects