Code Monkey home page Code Monkey logo

content-clust's Introduction

content-clust

here we try different approaches in scRNAseq that have one idea in common: zero gene expression has qualitive difference from any other value.

current directions of work:

1. gene hierarchy

Some genes are expressed only in case another gene is expressed. So we make an orgraph of genes where gene A is connected to gene B if all cells that express B, express A. Then we analyse the graph. You can see the full algorithm in src/source.cpp

2. Gower distance

Gower distance is a measure of simmilarity between objects by both quantitive and qualitive features. By now, no code on this theme is uploaded.

content-clust's People

Contributors

redsnail avatar

Watchers

 avatar  avatar

content-clust's Issues

Make algorithm less naive

Now algorithm can't spot a subcluster unless it is a quantity of cells that express a particular gene. We need an algorithm based on assembling genes' children to graph components and continue clusterization on their union.

Make a readable output

Now the output of the algorithm is List containing both IntegerVectors and Lists of lower-levels clusters. Let it be at least JSON.

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.