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oudelaar-tiled-capture-2019

Data processing and analysis scripts for for Oudelaar, Beagrie et al. 2020

Raw sequencing data can be found at GEO

Project Organization

├── Makefile           <- Makefile with commands for setting up the repository
├── README.md          <- This top-level README
├── data
│   ├── intermediate   <- Intermediate data analysis files
│   ├── processed      <- The final, canonical data sets
│   └── raw            <- The original, immutable data
│
├── notebooks          <- Jupyter notebooks. Naming convention is a number (for ordering),
│                         and a short description
│
├── out                <- Generated analysis as HTML, PDF, LaTeX, etc.
│   └── figures        <- Generated graphics and figures to be used in reporting
│
├── requirements.txt   <- The requirements file for reproducing the analysis environment, e.g.
│                         generated with `pip freeze > requirements.txt`
│
└── lib                <- Source code for use in this project.
    │
    └──  oudelaar-tiled-capture-2019 <- Module containing re-usable code for project
        └── __init__.py

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