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CHEAHA Conda Env Setup

Cheaha

New job composer .sh script

#!/bin/bash
#SBATCH --partition=pascalnodes
#SBATCH --gres=gpu:1
#SBATCH --mem-per-cpu=4000

module load cuda10.0/toolkit
module load Anaconda3

FOLDER=/data/user/$USER/ds
URL=https://github.com/RahulSaini02/Cheaha-Data-Science-Environment.git
if [ ! -d "$FOLDER" ] ; then
  git clone "$URL" "$FOLDER"
conda env create -f /data/user/$USER/ds/packages.yml --name ds
else
  cd $FOLDER
  git pull "$URL"
  conda env update -n ds -f /data/user/$USER/ds/packages.yml
fi

Under environment setup, specify

# Load required modules
module load cuda10.0/toolkit
module load Anaconda3

Under Extra jupyter arguments, specify

--notebook-dir=/data/user/$USER/ds

For partition, specify

pascalnodes

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