Comments (1)
Seems like ko_genes need to be specified earlier..
knk = st.scTenifoldKnk(data = data, ko_genes = "NG-6", qc_kws = {'min_lib_size':10})
knk.run_step('ko', ko_method = 'default')
>>> knk.ko_genes
'NG-6'
knk = st.scTenifoldKnk(data = data, qc_kws = {'min_lib_size':10})
knk.run_step('ko', ko_genes = 'NG-6', ko_method = 'default')
>>> knk.ko_genes
[]
from sctenifoldpy.
Related Issues (10)
- Dev: Add saving function to scTenifold objects
- Dev: command line tool
- Dev: Add data loading functions
- Doc: Tutorials
- Dev: Add more EDA function
- Dev: knock-out and plot
- ModuleNotFoundError: No module named 'scTenifold.core' HOT 1
- Timeout error during histogram QC HOT 3
- scTenifoldKnk does not return diffRegulation HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from sctenifoldpy.