Timeout error during histogram QC about sctenifoldpy HOT 3 CLOSED

Hello B195515,
Thanks for using this package. Could you update this package to 0.1.3 and add {"plot": False} to the qc_kws in scTenifoldNet?
For example,
sc = scTenifoldNet(df_1, df_2, "X", "Y", qc_kws={"min_lib_size": 1, "plot": False}, nc_kws={"n_cpus": 1})

Please let me know if this fix the issue. Thanks!

from sctenifoldpy.

Hi, thanks for your reply!

I managed to figure out that the issue was with Ray not being able to use multiple cores (nc step) in my institute's compute cluster for some unknown reason.
It works now on a different compute node, and I used the step-by-step run. Works great!

from sctenifoldpy.

Glad to hear that everything works now. I will close this issue now. Feel free to reopen it if the problem happens again.

from sctenifoldpy.