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pyro

Deep universal probabilistic programming with Python and PyTorch

pyro_zh_tutorial

Pyro official tutorial 的中文编译项目，在保证原文意思的前提下加入一些自己的理解。

pyrovelocity

Probabilistic model of RNA velocity

rethinking-numpyro

Statistical Rethinking (2nd ed.) with NumPyro

rms_analysis

single cell data analysis for rms

rust

All Algorithms implemented in Rust

saber

SABER: Selection of Amplicon Barcodes from Experimental Replicates

sc_normal_muscle

april's data analysis

scatac

Some exploratory scripts for analyzing single cell ATAC-seq

scikit-llm

Seamlessly integrate LLMs into scikit-learn.

scvelo

Stochastic Single Cell RNA Velocity

seqpos2

A motif scan tool

singlecelllineage

Updated scripts and pipelines for processing GESTALT data at single-cell resolution

singlecellopenproblems

Formalizing and benchmarking open problems in single-cell genomics

singlecellvr

snakemake-workflows

Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.

snapatac2

Single-cell epigenomics analysis tools

sniffles

Structural variation caller using third generation sequencing

sparklespray

Easy batch submission of adhoc jobs onto GCP

stat_rethinking_2023

Statistical Rethinking Course for Jan-Mar 2023

svwdltest

test for sv wdl

taigapy

Library for reading from taiga in python

tasks

A collection of reusable WDL tasks. Category:Other

terra-tools

scripts for use with Terra

texsweave

for store Sweave and latex

tfimpute

backup code from Mercurial

toil

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

wdldoc

Create WDL documentation using Markdown.

wgd

A suite of tools to evaluate dosage in whole-genome sequencing libraries