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hrmutants

supplementary scripts

hrpi

Rmarkdown / compiled html files for human reprogramming dataset analysis

human_epi

Data analysis for the paper "Single cell transcriptomics of human epidermis identifies basal stem cell transition states" in Nature Communications.

human_wes_somatic_tumoronly_pipeline

It is an internal tumor-only somatic variant calling pipeline for human WES data

humanbreast10x

humanliver

R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

icellr

Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).

iedge

integrative analysis of (epi-)DNA and gene expression data for the identification of candidate cancer drivers

igv-reports

Python application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.

ikarus

Identifying tumor cells at the single-cell level using machine learning

imap

A novel unsupervised batch removal framework, called iMAP, based on neural networks.

immunecellssig_comment

immuno_notes

Immunology-related bioinformatics data and tools

immunogenomiclandscape-bloodcancer

ims_gene_signature

Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma

imsig

Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours

interactive-reporting-dashboards-in-shiny

Overview of Interactive Reporting & Dashboards in Shiny

interplay-tumor-codes

iobio-gru-backend

iobr

IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

ith-nf

kc-uid

The `kcUID` software suite is used to process UID library RNA-seq reads in SeqHealth.

kpjmisc

R package, miscellaneous functions for work-related tasks

kraken2

The second version of the Kraken taxonomic sequence classification system

ktplots

Some tools for plotting single-cell data

lancet

Microassembly based somatic variant caller for NGS data

ldsc

LD Score Regression (LDSC)

libis

lily

Detection of super-enhancers in cancer data

liverannotation