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10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC
vsearch based 16S targeted metagenomics pipeline
Code and data repository for the 2020 physalia course on single cell RNA sequencing.
Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVID-19"
This repository contains R code, with which you can create 3D tSNE plots of Seurat analyzed scRNAseq data
3MCor: an integrative web server for metabolome-microbiome-metadata correlation analysis
Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
Scripts used for the ACT paper
R script(s) for analysing aging mice brain snRNAseq data.
AIMS bioconductor package
AluScanCNV2 is an R package that integrates the cross-platform CNV detection and tumor prediction function on the basis of AluScanCNV software developed in the early stage.
AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more regions of interest. Please "watch" this repository for improvements in runtime, accuracy and annotations for GRCh38 human reference genome coming up soon.
Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
Angular bubble tree chart using d3
Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=annotatr.
Single cell epigenomic clustering based on accessibility pattern
R package for computing Association Plots
Network Reverse Engineering through AP inference of Mutual Information
Fast and accurate gene fusion detection from RNA-Seq data
An accurate and robust cross-modality cell type annotation method for scATAC-seq data
Python programs for automatically annotate vcf (variant call) file with Oncotator by selenium webdriver
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
A read extraction and realignment tool for next generation sequencing data
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.