ptaconet / modisfast Goto Github PK

View Code? Open in Web Editor NEW

24.0 1.0 4.0 8.8 MB

Fast and efficient access to MODIS data (and several other Earth datacubes sources) with R

Home Page: https://ptaconet.github.io/modisfast

License: GNU General Public License v3.0

R 88.60% TeX 11.40%

r data-cube opendap environmental-data earth-science-data modis-land gpm viirs-land

modisfast's Introduction

Hi there 👋

I'm a postdoc at the French Research Institute for Sustainable Development (IRD), in the unit : Infectious Diseases and Vectors: Ecology, Genetics, Evolution, and Control (MIVEGEC)
I'm a data scientist applied to bio-ecology, currently working on the DIV-YOO project (DIVersitY of mOsquitOes in West-Africa)
I have an interdisciplinary profile in computer science, data science, statistical modelling, machine learning, geography, GIS, remote sensing, bio-ecology and eco-epidemiology
I have a PhD from the University of Montpellier, in geospatial data mining for the bio-ecology of mosquitoes vectors of diseases
I am a strong supporter of the Open Science movement !

I'm addicted to R and I like to develop open, reproducible and as-much-as-possible reusable R scripts, that I share in this GitHub repo ! You can find here :

operational R packages (modisfast)
under-development R packages (eodataflow, getremotedata, shub4r)
archived R packages (rtunaatlas)
teaching material (td_renovbati_montpellier, formation_initiation_teledetection, td_anopheles_environnement)
temporary R scripts developed in side-projects (modeling_vector_mtp)
and many other stuff !

modisfast's People

Contributors

Stargazers

Watchers

Forkers

floriandeboissieu mengluchu btupper babakou9

modisfast's Issues

opendapr fails to build manual and vignettes

Hi @ptaconet,

I am looking for an efficient tool to access (subset and download) PO.DAAC OPeNDAP datasets and thus found opendapr.

Is it still maintained and developed?

Trying to build it using devtools as follows unfortunately throws errers and fails to build the manual and vignettes:

# install.packages("devtools")
devtools::install_github("ptaconet/opendapr", build_vignettes = T, build_manual = T)

Not building the manual and vignettes appears to work fine though:

devtools::install_github("ptaconet/opendapr", build_vignettes = F, build_manual = F)

Please find the output of my sessionInfo() below:

R version 4.0.3 (2020-10-10)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Catalina 10.15.7

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] opendapr_0.1.0 oce_1.4-0      sf_0.9-8       gsw_1.0-5      testthat_3.0.2

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.6         lubridate_1.7.10   lattice_0.20-41    prettyunits_1.1.1  class_7.3-17       ps_1.6.0           assertthat_0.2.1  
 [8] rprojroot_2.0.2    digest_0.6.27      utf8_1.2.1         R6_2.5.0           e1071_1.7-6        httr_1.4.2         pillar_1.5.1      
[15] rlang_0.4.10       curl_4.3           rstudioapi_0.13    callr_3.5.1        raster_3.4-5       desc_1.3.0         devtools_2.3.2    
[22] stringr_1.4.0      proxy_0.4-25       compiler_4.0.3     cmocean_0.3-1      xfun_0.20          pkgconfig_2.0.3    pkgbuild_1.2.0    
[29] tidyselect_1.1.0   tibble_3.1.0       codetools_0.2-18   fansi_0.4.2        crayon_1.4.1       dplyr_1.0.5        withr_2.4.1       
[36] grid_4.0.3         lwgeom_0.2-5       lifecycle_1.0.0    DBI_1.1.1          magrittr_2.0.1     units_0.7-1        ncdf4_1.17        
[43] KernSmooth_2.23-18 cli_2.3.1          stringi_1.5.3      fs_1.5.0           remotes_2.2.0      sp_1.4-5           xml2_1.3.2        
[50] ellipsis_0.3.1     generics_0.1.0     vctrs_0.3.6        tools_4.0.3        glue_1.4.2         purrr_0.3.4        processx_3.5.0    
[57] abind_1.4-5        pkgload_1.2.0      parallel_4.0.3     sessioninfo_1.1.1  stars_0.5-2        classInt_0.4-3     rvest_1.0.0       
[64] memoise_1.1.0      knitr_1.30         usethis_2.0.0

MOD14 and MYD04_L2 are missing (not supported)

It is a very nice and fast tool! Love it!!
But it mentioned:
Currently modisfast supports download of 77 data collections, extracted from the following meta-collections :

MOD14.061 and MYD04_L2.061 are very useful datasets and seem not to be able to use this tool to download.

Also, what if I want to make the Polygen in your example as a box [-180,83,-50,14], could you please tell me how to change it?

Thanks!

add support to access PO.DAAC OPeNDAP datasets?

Hi @ptaconet,

As I've already mentioned at #4 (comment), I would like to use opendapr to (spatiotemporal) subset and access PO.DAAC OPeNDAP datasets.

Do you still plan to provide access to more collections and OPeNDAP servers including PO.DAAC?

Many thanks in advance!

ptaconet / modisfast Goto Github PK

modisfast's Introduction

Hi there 👋

modisfast's People

Contributors

Stargazers

Watchers

Forkers

modisfast's Issues

opendapr fails to build manual and vignettes

MOD14 and MYD04_L2 are missing (not supported)

add support to access PO.DAAC OPeNDAP datasets?

Recommend Projects

React

Vue.js

Typescript

TensorFlow

Django

Laravel

D3

Recommend Topics

javascript

web

server

Machine learning

Visualization

Game

Recommend Org

Facebook

Microsoft

Google

Alibaba

D3

Tencent