praljakreps Goto Github PK

atom3d

Atomic tasks on molecules in three dimensions

auto-gpt

An experimental open-source attempt to make GPT-4 fully autonomous.

bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

chemcrow-public

Chemcrow

cv

Curriculum Vitae (Version: November 5th, 2022)

galai

Model API for GALACTICA

gearnet

GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

gitignore

A collection of useful .gitignore templates

infovae-sh3_orthology

intro2biodatascience

keras_lstm_vae

Keras implementation of LSTM Variational Autoencoder

latentcondddpm

Final project for fundamentals of deep learning at Toyota Tech. Institute Chicago with Professor David A. McAllester.

lightning

Build and train PyTorch models and connect them to the ML lifecycle using Lightning App templates, without handling DIY infrastructure, cost management, scaling, and other headaches.

llama-qrlhf

Implementation of the Llama architecture with RLHF + Q-learning

matlab-video-2-gif

Converts videos to gif directly frame by frame (modification to Moshe Lindner's code)

minimalist_codon_translation

Hat tip to Bryan Andrews, the most minimalist code for reverse aa translation and specie codon optimization.

praljakreps.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

protwavevae

protwavevae_model

A fully featured autoregressive (AR) Variational autoencoder (VAE) using a WaveNet decoder for data-driven protein design (ProtWave-VAE).

pysca_temp

Python3 implementation of Statistical Coupling Analysis (SCA)

refinegnnplus

Make innovations onto the RefineGNN model. For example, one innovation is to replace the GRU used for the framework region with a Transformer encoder.

tmalign_for_design_predictions

Tmalign algorithm for high-throughput TMscore retrieval for a library of design sequences with structure predictions

tmux

tmux source code

toolformer-pytorch

Implementation of Toolformer, Language Models That Can Use Tools, by MetaAI

tutorials

PyTorch tutorials.

uchicago_aiplusscience_code_workshops

wf-fair_esm

wf-sca

Latch Bio SDK workflow of the Statistical Coupling Analysis (SCA) algorithm.