pmla / auguste Goto Github PK

Making a separate issue out of the problem described in #4:

... the pip install doesn't work on macOS without manually modifying the setup.py to set MACOSX_DEPLOYMENT_TARGET.

@mkhorton, can you paste your modified setup.py? I am not a macOS user but I will modify the travis CI script so that this gets tested properly.

There seem to be compilation errors on macOS, this has been a common issue with several codes so should be an easy fix in your setup.py:

    warning: include path for stdlibc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]

See here for a fix: https://github.com/pandas-dev/pandas/blob/8e4424fbcfc98d23085ddbcf8765946bc85da035/setup.py#L477 (thanks @utf)

Also, I was wondering if you were planning to release this on PyPI for a normal pip install? This looks like a great code, would look forward to using it!

Hello,

Thanks for the excellent code and paper, which is very interesting.

I was trying out Auguste and it seems to work on 99% of cells but I sometimes receive a symmetrization failed error. Is it expected that symmetrization would fail in some cases?

For example, consider this cell:

[[-5.35538034 -0.1350599  -5.2795042 ]
 [ 5.35538034 -5.2795042  -0.1350599 ]
 [-5.35538034 -5.2795042  -0.1350599 ]]

Separately, the pip install doesn't work on macOS without manually modifying the setup.py to set MACOSX_DEPLOYMENT_TARGET.

Many thanks!