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Comments (4)

clippert avatar clippert commented on July 30, 2024

Hi Inti,

We are right now working on better documenting the format. Also we should have a converter from binary plink to hdf5 up within a couple of days.

Christoph

From: Inti Pedroso [mailto:[email protected]]
Sent: Friday, May 23, 2014 3:13 AM
To: PMBio/limix
Subject: [limix] Data into HDF5 format (#1)

Hi,
I am looking for some help to get genotype/phenotype data into the HDF5 format required by LIMIX. do you have some example scripts or can you point me to the relevant parts of the code?

thanks in advance,
Inti

—
Reply to this email directly or view it on GitHubhttps://github.com/PMBio/limix/issues/1.

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inti avatar inti commented on July 30, 2024

Thank you. look forward to it. Inti

On 23/05/14 15:18, clippert wrote:

Hi Inti,

We are right now working on better documenting the format. Also we
should have a converter from binary plink to hdf5 up within a couple
of days.

Christoph

From: Inti Pedroso [mailto:[email protected]]
Sent: Friday, May 23, 2014 3:13 AM
To: PMBio/limix
Subject: [limix] Data into HDF5 format (#1)

Hi,
I am looking for some help to get genotype/phenotype data into the
HDF5 format required by LIMIX. do you have some example scripts or can
you point me to the relevant parts of the code?

thanks in advance,
Inti

—
Reply to this email directly or view it on
GitHubhttps://github.com/PMBio/limix/issues/1.

—
Reply to this email directly or view it on GitHub
https://github.com/PMBio/limix/issues/1#issuecomment-44014224.

from limix-backup.

ostegle avatar ostegle commented on July 30, 2024

Hi Inti,

there is now a limix_converter.py in src/interfaces/python/bin. It will be installed if you use scons install and currently supports to conversion from plink (genotype) and a simple csv file (phenotype).

The functionality will be more extensive soon.

Oliver

from limix-backup.

inti avatar inti commented on July 30, 2024

Hi,
Thanks, I'll check it.
BW,
Inti

On 1 June 2014 16:06, ostegle [email protected] wrote:

Hi Inti,

there is now a limix_converter.py in src/interfaces/python/bin. It will be
installed if you use scons install and currently supports to conversion
from plink (genotype) and a simple csv file (phenotype).

The functionality will be more extensive soon.

Oliver

—
Reply to this email directly or view it on GitHub
https://github.com/PMBio/limix/issues/1#issuecomment-44779896.

from limix-backup.

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