pik-piam / magpie4 Goto Github PK

View Code? Open in Web Editor NEW

2.0 2.0 24.0 2.17 MB

R package | MAgPIE outputs R package for MAgPIE version 4.x

License: GNU Lesser General Public License v3.0

R 99.77% Makefile 0.23%

magpie4's People

Contributors

Watchers

magpie4's Issues

Inconsistent output of FoodExpanditure() and consumptionValue(..., type="food") functions

Ideally this should be the same. For the difference between the output of FoodExpenditure() and consumptionValue(..., type="food"), it basically comes from usage of different approaches for calculation of prices and quantities, the former using prices per kcal and caloric intake and the latter using prices per tones DM and tDM consumption. Since prices in both case are calculated as Lagrangian multipliers, it could be that the difference in output of functions comes from a general equation system setup in magpie and related interplay between demand variables.

Cannot be loaded in macOS

Hi, Thanks for developing this package.

I want to install magpie for modeling food demand in macOS, M2 chip. I already install GAMS as well as its license.

However, it cannot be loaded.

When I:

library(magpie4)

It produces:

Loading required package: gdx
Loading required package: gdxrrw
Loading required package: magclass
Error loading the GDX API from gamsSysDir=
Could not load shared library /Library/Frameworks/GAMS.framework/Resources/libgdxdclib64.dylib: dlopen(/Library/Frameworks/GAMS.framework/Resources/libgdxdclib64.dylib, 0x0002): tried: '/Library/Frameworks/GAMS.framework/Resources/libgdxdclib64.dylib' (ma
Environment variable R_GAMS_SYSDIR not set: no GDX API there
Error loading the GDX API via the default shared library search mechanism
Could not load shared library libgdxdclib64.dylib: dlopen(libgdxdclib64.dylib, 0x0002): tried: 'libgdxdclib64.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OSlibgdxdclib64.dylib' (no such file), '/opt/homebrew/opt/llvm/lib/libgdxdclib64.dylib'
DYLD_LIBRARY_PATH is not set!
The GDX library has not been loaded
Error loading the GDX API from gamsSysDir=
Could not load shared library /Library/Frameworks/GAMS.framework/Resources/libgdxdclib64.dylib: dlopen(/Library/Frameworks/GAMS.framework/Resources/libgdxdclib64.dylib, 0x0002): tried: '/Library/Frameworks/GAMS.framework/Resources/libgdxdclib64.dylib' (ma
Environment variable R_GAMS_SYSDIR not set: no GDX API there
Error loading the GDX API via the default shared library search mechanism
Could not load shared library libgdxdclib64.dylib: dlopen(libgdxdclib64.dylib, 0x0002): tried: 'libgdxdclib64.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OSlibgdxdclib64.dylib' (no such file), '/opt/homebrew/opt/llvm/lib/libgdxdclib64.dylib'
DYLD_LIBRARY_PATH is not set!
The GDX library has not been loaded

Here is my session information:

─ Session info ───────────────────────────────────────
 setting  value
 version  R version 4.2.1 (2022-06-23)
 os       macOS Ventura 13.1
 system   aarch64, darwin20
 ui       RStudio
 language (EN)
 collate  en_US.UTF-8
 ctype    en_US.UTF-8
 tz       Asia/Shanghai
 date     2023-01-18
 rstudio  2022.12.0+353 Elsbeth Geranium (desktop)
 pandoc   2.18 @ /opt/homebrew/bin/pandoc

─ Packages ───────────────────────────────────────────
 package      * version  date (UTC) lib source
 abind          1.4-5    2016-07-21 [1] CRAN (R 4.2.0)
 assertthat     0.2.1    2019-03-21 [1] CRAN (R 4.2.0)
 backports      1.4.1    2021-12-13 [1] CRAN (R 4.2.0)
 base64enc      0.1-3    2015-07-28 [1] CRAN (R 4.2.0)
 cachem         1.0.6    2021-08-19 [1] CRAN (R 4.2.0)
 callr          3.7.3    2022-11-02 [1] CRAN (R 4.2.0)
 cellranger     1.1.0    2016-07-27 [1] CRAN (R 4.2.0)
 checkmate      2.1.0    2022-04-21 [1] CRAN (R 4.2.0)
 citation       0.6.3    2022-08-18 [1] CRAN (R 4.2.0)
 cli            3.5.0    2022-12-20 [1] CRAN (R 4.2.0)
 cluster        2.1.4    2022-08-22 [1] CRAN (R 4.2.0)
 colorspace     2.0-3    2022-02-21 [1] CRAN (R 4.2.0)
 countrycode    1.4.0    2022-05-04 [1] CRAN (R 4.2.0)
 crayon         1.5.2    2022-09-29 [1] CRAN (R 4.2.0)
 cyclocomp      1.1.0    2016-09-10 [1] CRAN (R 4.2.0)
 data.table     1.14.6   2022-11-16 [1] CRAN (R 4.2.0)
 DBI            1.1.3    2022-06-18 [1] CRAN (R 4.2.0)
 deldir         1.0-6    2021-10-23 [1] CRAN (R 4.2.0)
 desc           1.4.2    2022-09-08 [1] CRAN (R 4.2.0)
 devtools       2.4.5    2022-10-11 [1] CRAN (R 4.2.0)
 digest         0.6.31   2022-12-11 [1] CRAN (R 4.2.0)
 dotCall64      1.0-2    2022-10-03 [1] CRAN (R 4.2.0)
 dplyr          1.0.10   2022-09-01 [1] CRAN (R 4.2.0)
 ellipsis       0.3.2    2021-04-29 [1] CRAN (R 4.2.0)
 fansi          1.0.3    2022-03-24 [1] CRAN (R 4.2.0)
 fastmap        1.1.0    2021-01-25 [1] CRAN (R 4.2.0)
 fields         14.1     2022-08-12 [1] CRAN (R 4.2.0)
 filelock       1.0.2    2018-10-05 [1] CRAN (R 4.2.0)
 forcats        0.5.2    2022-08-19 [1] CRAN (R 4.2.0)
 foreign        0.8-84   2022-12-06 [1] CRAN (R 4.2.0)
 Formula        1.2-4    2020-10-16 [1] CRAN (R 4.2.0)
 fs             1.5.2    2021-12-08 [1] CRAN (R 4.2.0)
 gdx          * 1.51.5   2023-01-17 [1] https://rse.pik-potsdam.de/r/packages (R 4.2.1)
 gdxrrw       * 1.0.10   2023-01-17 [1] https://rse.pik-potsdam.de/r/packages (R 4.2.1)
 generics       0.1.3    2022-07-05 [1] CRAN (R 4.2.0)
 geometry       0.4.6.1  2022-07-04 [1] CRAN (R 4.2.0)
 ggplot2        3.4.0    2022-11-04 [1] CRAN (R 4.2.0)
 glue           1.6.2    2022-02-24 [1] CRAN (R 4.2.0)
 gms            0.23.1   2023-01-17 [1] https://rse.pik-potsdam.de/r/packages (R 4.2.1)
 gridExtra      2.3      2017-09-09 [1] CRAN (R 4.2.0)
 gtable         0.3.1    2022-09-01 [1] CRAN (R 4.2.0)
 Hmisc          4.7-2    2022-11-18 [1] CRAN (R 4.2.0)
 hms            1.1.2    2022-08-19 [1] CRAN (R 4.2.0)
 htmlTable      2.4.1    2022-07-07 [1] CRAN (R 4.2.0)
 htmltools      0.5.4    2022-12-07 [1] CRAN (R 4.2.0)
 htmlwidgets    1.6.1    2023-01-07 [1] CRAN (R 4.2.1)
 httpuv         1.6.7    2022-12-14 [1] CRAN (R 4.2.0)
 httr           1.4.4    2022-08-17 [1] CRAN (R 4.2.0)
 igraph         1.3.5    2022-09-22 [1] CRAN (R 4.2.0)
 interp         1.1-3    2022-07-13 [1] CRAN (R 4.2.0)
 jpeg           0.1-10   2022-11-29 [1] CRAN (R 4.2.0)
 jsonlite       1.8.4    2022-12-06 [1] CRAN (R 4.2.0)
 KernSmooth     2.23-20  2021-05-03 [1] CRAN (R 4.2.1)
 knitr          1.41     2022-11-18 [1] CRAN (R 4.2.1)
 later          1.3.0    2021-08-18 [1] CRAN (R 4.2.0)
 lattice        0.20-45  2021-09-22 [1] CRAN (R 4.2.1)
 latticeExtra   0.6-30   2022-07-04 [1] CRAN (R 4.2.0)
 lazyeval       0.2.2    2019-03-15 [1] CRAN (R 4.2.0)
 lifecycle      1.0.3    2022-10-07 [1] CRAN (R 4.2.0)
 lintr          3.0.2    2022-10-19 [1] CRAN (R 4.2.0)
 lpSolve        5.6.17   2022-10-10 [1] CRAN (R 4.2.0)
 lucode2        0.43.9   2023-01-17 [1] https://rse.pik-potsdam.de/r/packages (R 4.2.1)
 luplot         3.54.2   2023-01-17 [1] https://rse.pik-potsdam.de/r/packages (R 4.2.1)
 luscale        2.26.5   2023-01-17 [1] https://rse.pik-potsdam.de/r/packages (R 4.2.1)
 lusweave       1.46.3   2023-01-17 [1] https://rse.pik-potsdam.de/r/packages (R 4.2.1)
 madrat         2.22.1   2023-01-17 [1] https://rse.pik-potsdam.de/r/packages (R 4.2.1)
 magclass     * 6.8.0    2023-01-17 [1] https://rse.pik-potsdam.de/r/packages (R 4.2.1)
 magic          1.6-1    2022-11-16 [1] CRAN (R 4.2.0)
 magpie4      * 1.170.2  2023-01-18 [1] https://rse.pik-potsdam.de/r/packages (R 4.2.1)
 magpiesets     0.45.3   2023-01-17 [1] https://rse.pik-potsdam.de/r/packages (R 4.2.1)
 magrittr       2.0.3    2022-03-30 [1] CRAN (R 4.2.0)
 maps           3.4.1    2022-10-30 [1] CRAN (R 4.2.0)
 maptools       1.1-6    2022-12-14 [1] CRAN (R 4.2.0)
 Matrix         1.5-3    2022-11-11 [1] CRAN (R 4.2.0)
 memoise        2.0.1    2021-11-26 [1] CRAN (R 4.2.0)
 mime           0.12     2021-09-28 [1] CRAN (R 4.2.0)
 miniUI         0.1.1.1  2018-05-18 [1] CRAN (R 4.2.0)
 mip            0.140.1  2023-01-17 [1] https://rse.pik-potsdam.de/r/packages (R 4.2.1)
 mstools        0.3.0    2023-01-17 [1] https://rse.pik-potsdam.de/r/packages (R 4.2.1)
 munsell        0.5.0    2018-06-12 [1] CRAN (R 4.2.0)
 nnet           7.3-18   2022-09-28 [1] CRAN (R 4.2.0)
 nonparaeff     0.5-13   2022-06-21 [1] CRAN (R 4.2.0)
 pillar         1.8.1    2022-08-19 [1] CRAN (R 4.2.0)
 pkgbuild       1.4.0    2022-11-27 [1] CRAN (R 4.2.0)
 pkgconfig      2.0.3    2019-09-22 [1] CRAN (R 4.2.0)
 pkgload        1.3.2    2022-11-16 [1] CRAN (R 4.2.1)
 plotly         4.10.1   2022-11-07 [1] CRAN (R 4.2.0)
 plyr           1.8.8    2022-11-11 [1] CRAN (R 4.2.0)
 png            0.1-8    2022-11-29 [1] CRAN (R 4.2.0)
 prettyunits    1.1.1    2020-01-24 [1] CRAN (R 4.2.0)
 processx       3.8.0    2022-10-26 [1] CRAN (R 4.2.0)
 profvis        0.3.7    2020-11-02 [1] CRAN (R 4.2.0)
 promises       1.2.0.1  2021-02-11 [1] CRAN (R 4.2.0)
 ps             1.7.2    2022-10-26 [1] CRAN (R 4.2.0)
 purrr          1.0.0    2022-12-20 [1] CRAN (R 4.2.0)
 qualV          0.3-4    2021-10-07 [1] CRAN (R 4.2.0)
 quitte         0.3108.2 2023-01-17 [1] https://rse.pik-potsdam.de/r/packages (R 4.2.1)
 R.cache        0.16.0   2022-07-21 [1] CRAN (R 4.2.0)
 R.methodsS3    1.8.2    2022-06-13 [1] CRAN (R 4.2.0)
 R.oo           1.25.0   2022-06-12 [1] CRAN (R 4.2.0)
 R.utils        2.12.2   2022-11-11 [1] CRAN (R 4.2.0)
 R6             2.5.1    2021-08-19 [1] CRAN (R 4.2.0)
 RColorBrewer   1.1-3    2022-04-03 [1] CRAN (R 4.2.0)
 Rcpp           1.0.9    2022-07-08 [1] CRAN (R 4.2.0)
 readr          2.1.3    2022-10-01 [1] CRAN (R 4.2.0)
 readxl         1.4.1    2022-08-17 [1] CRAN (R 4.2.0)
 remotes        2.4.2    2021-11-30 [1] CRAN (R 4.2.0)
 renv           0.16.0   2022-09-29 [1] CRAN (R 4.2.0)
 reshape2       1.4.4    2020-04-09 [1] CRAN (R 4.2.0)
 rex            1.2.1    2021-11-26 [1] CRAN (R 4.2.0)
 rlang          1.0.6    2022-09-24 [1] CRAN (R 4.2.0)
 rpart          4.1.19   2022-10-21 [1] CRAN (R 4.2.0)
 rprojroot      2.0.3    2022-04-02 [1] CRAN (R 4.2.0)
 rstudioapi     0.14     2022-08-22 [1] CRAN (R 4.2.0)
 rworldmap      1.3-6    2016-02-03 [1] CRAN (R 4.2.0)
 scales         1.2.1    2022-08-20 [1] CRAN (R 4.2.0)
 sessioninfo    1.2.2    2021-12-06 [1] CRAN (R 4.2.0)
 shiny          1.7.4    2022-12-15 [1] CRAN (R 4.2.0)
 sp             1.5-1    2022-11-07 [1] CRAN (R 4.2.0)
 spam           2.9-1    2022-08-07 [1] CRAN (R 4.2.0)
 stringi        1.7.8    2022-07-11 [1] CRAN (R 4.2.0)
 stringr        1.5.0    2022-12-02 [1] CRAN (R 4.2.0)
 styler         1.9.0    2023-01-15 [1] CRAN (R 4.2.0)
 survival       3.4-0    2022-08-09 [1] CRAN (R 4.2.0)
 tibble         3.1.8    2022-07-22 [1] CRAN (R 4.2.0)
 tidyr          1.2.1    2022-09-08 [1] CRAN (R 4.2.0)
 tidyselect     1.2.0    2022-10-10 [1] CRAN (R 4.2.0)
 trafficlight   1.13.1   2023-01-17 [1] https://rse.pik-potsdam.de/r/packages (R 4.2.1)
 tzdb           0.3.0    2022-03-28 [1] CRAN (R 4.2.0)
 urlchecker     1.0.1    2021-11-30 [1] CRAN (R 4.2.0)
 usethis        2.1.6    2022-05-25 [1] CRAN (R 4.2.0)
 utf8           1.2.2    2021-07-24 [1] CRAN (R 4.2.0)
 vctrs          0.5.1    2022-11-16 [1] CRAN (R 4.2.0)
 viridis        0.6.2    2021-10-13 [1] CRAN (R 4.2.0)
 viridisLite    0.4.1    2022-08-22 [1] CRAN (R 4.2.0)
 withr          2.5.0    2022-03-03 [1] CRAN (R 4.2.0)
 writexl        1.4.2    2023-01-06 [1] CRAN (R 4.2.0)
 xfun           0.36     2022-12-21 [1] CRAN (R 4.2.0)
 xml2           1.3.3    2021-11-30 [1] CRAN (R 4.2.0)
 xtable         1.8-4    2019-04-21 [1] CRAN (R 4.2.0)
 yaml           2.3.6    2022-10-18 [1] CRAN (R 4.2.0)
 zoo            1.8-11   2022-09-17 [1] CRAN (R 4.2.0)

 [1] /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library

Do you have any idea how to make it work?

trade function returns a warning for recent magpie runs

The trade function returns a warning about inconcistencies in wood and woodfuel demand and production:

In trade(gdx, level = "regglo", type = "net-exports") : For the following categories, demand EXCEEDS production (????) (on top of balanceflow): wood, woodfuel

This needs to be fixed. Either in the trade function or in MAgPIE itself (not sure where the problem originates from)

Kcal(gdx, level="regglo", after_shock=FALSE, calibrated=FALSE) does not return a time series

In contrast to all other combinations of after_shock TRUE/FALSE and calibrated TRUE/FALSE, the combination after_shock=FALSE and calibrated=FALSE does not return a time series.
This is counter intuitive to me and is causing some problems with functions such as PriceElasticities.

Is that intended or is that a mistake?

.filtermagpie

beim ausführen der Funktion getReportMAgPIE2LPJmL in magpie4 bekomme ich folgenden Fehler in der subroutine .filtermagpie

Error in Ops.units(u1, u2) : operation | not allowed

die funktion ist folgende:

.tmp <- function(mstat,filter) {
tmp <- FALSE
for(f in filter) {
tmp <- tmp | (mstat==f)
}
return(tmp)
}

ich verstehen auch nciht was das hier tmp | (mstat==f) zurückliefern soll.

tmp
[1] FALSE
filter
[1] 2 7
mstat
An object of class "magpie"
, , = main

 t
  y1995 y2000 y2005 y2010 y2015 y2020 y2025 y2030 y2035 y2040 y2045 y2050 y2055 y2060 y2070 y2080 y2090 y2100

GLO 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2

ich glaube das geht nur mit einem modelstat, kann das sein?

Feeding efficiency

It would be great to have some indicators for

a) feeding efficiency/productivity in terms of DM, GE and N
b) concentrate share in terms of Isabelles main categories
c) yields of product/animal

in both results and validation

If you want, you can also supervise a student helper doing this.

magpie4 on cluster

magpie4 seems to have disappeared from installed packages on cluster.

An R session on clutser provides this error

library(magpie4)
Error in library(magpie4) : there is no package called 'magpie4'

Checking for version magpie4 on cluster provides the following message

Package: magpie4
Installed version: <not installed>
Last updated: <never>

Availability in repositories:
<not available> | https://cran.rstudio.com/
1.66.0 | http://www.pik-potsdam.de/rd3mod/R/
1.65.0 | https://rse.pik-potsdam.de/r/packages/

Trying to make two sets to check CONOPT4 settings and it is not possible at the moment to make these tests on cluster without this package availability.

warning in reportSDG12

reportSDG12 returns the following warning:

45: In reportSDG12(gdx) : better backcaclulation of footprint would be nice!

If this is critical it needs to be fixed, if not, the warning needs to be removed or converted to a note, as it otherwise distracts from critical warnings which need to be seen.

Recommend Projects

React

A declarative, efficient, and flexible JavaScript library for building user interfaces.
Vue.js

🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript

TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
TensorFlow

An Open Source Machine Learning Framework for Everyone
Django

The Web framework for perfectionists with deadlines.
Laravel

A PHP framework for web artisans
D3

Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

javascript

JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
web

Some thing interesting about web. New door for the world.
server

A server is a program made to process requests and deliver data to clients.
Machine learning

Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Visualization

Some thing interesting about visualization, use data art
Game

Some thing interesting about game, make everyone happy.

Recommend Org

Facebook

We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft

Open source projects and samples from Microsoft.
Google

Google ❤️ Open Source for everyone.
Alibaba

Alibaba Open Source for everyone
D3

Data-Driven Documents codes.
Tencent

China tencent open source team.