This code uses the biomaRt
package to connect to the Ensembl database,
retrieve information about certain genes, and write the results to a file.
The code first connects to the Ensembl database using the useMart()
function
and specifies that the dataset being used is "hsapiens_gene_ensembl"
(human genes).
Then it reads a file called "genes.txt"
which contain list of gene IDs.
It uses the getBM()
function to query the Ensembl database for the HGNC symbol,
chromosome name, and band for the genes specified in the genes.txt file.
Finally, it writes the results of the query to a file called "out.txt"
in
tab-separated format. One suggestion could be to verify if the file
"genes.txt" exists before trying to read it, and to check the results
of the query, in order to validate the returned data is correct.
biomart_code's Introduction
biomart_code's People
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. ๐๐๐
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google โค๏ธ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.