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nanoql

A DSL to query sequence databases based on GraphQL.

nanotext

Proteins as words, genomes as documents.

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

nucleoform

A language to manipulate and learn from genomic data

panprimer

Design strain-specific primers from pangenomes

pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

pdbtools

A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files

peek

small set of utilities to peek at sequencing results

phd-thesis

Repository of my thesis "Understanding Random Forests"

phiweger.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

picotext

plastic

polar_bear

RIP Fritz

porechop

adapter trimmer for Oxford Nanopore reads

porecov

SARS-CoV-2 workflow for nanopore sequence data

ppv

various analysis scripts

prime

small command-line tool to deal w/ many primers during PCR setup

primer

Automatic primer design for variant validation

primer4

Validating mutations without the pain

protocols

a collection of protocols, some wet, some dry, some moist ...

pulpy

Open prediction of Polysaccharide Utilisation Loci (PUL)

py3dmol

pymmds

Extendible metric MDS in Python

python-json-patch

Applying JSON Patches in Python 2.6+ and 3.x

python-json-pointer

Resolve JSON Pointers in Python

pytorchstepbystep

Official repository of my book: "Deep Learning with PyTorch Step-by-Step: A Beginner's Guide"

reference

untidy code snippets for personal reference

rmarkdown_reports

collection of rmarkdowns by tools

sourmash

Compute and compare MinHash signatures for DNA data sets.

spacegraphcats

In space, no one can hear you miao. And graphs!