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Bioinformatics training materials

A curated list of bioinformatics training material. All material is:

  • In a GitHub or GitLab repository
  • Free to use
  • Written in markdown or similar

NOTE: This list of courses is selected only based on the above criteria. There are no checks on quality.

Is your (favourite) course not in there? Is a link dead? Did you find a typo? Any contribution to this list is highly appreciated 👍. Please have a look at CONTRIBUTING.md first.

Contents

Scripting and languages

UNIX shell

Python

R

git

Sequence data analysis

General

Miscellaneous

RNA-seq

ChIP-seq

Single cell

Spatial transcriptomics

Variant analysis

Genome assembly & annotation

Metagenomics/microbial

Computational methods and pipelines

Containers

Nextflow

Snakemake

Galaxy

CWL

High performance computing

Statistics and machine learning

Statistics

Machine learning

Reproducibility and data management

FAIR & Reproducibility

Data management

Image analysis

Other lists

training-collection's People

Contributors

abotzki avatar geertvangeest avatar hrhotz avatar robinengler avatar wandrilled avatar

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