pblischak Goto Github PK
Name: Paul Blischak
Type: User
Company: Bayer Crop Science
Bio: Computational Genetics/Genomics :: Bioinformatics :: Data Science
Twitter: PaulBlischak
Location: Gainesville, FL
Paul Blischak's Projects
approximate_bayes
A worked example of approximate Bayesian computation in R
bann_spdelim
Python scripts for processing B. annulata ddRADseq data
bioconda-recipes
Conda recipes for the bioconda channel.
boost-docker-test
Test program for compiling/linking with the Boost C++ Libraries to create a Docker image
botany2015
Botany 2015 presentation repo
dotfiles
My dotfiles
evol2017
Tutorial, code, and data for Evolution 2017
evolution2016
Evolution 2016 Presentation (Austin, TX)
fluidigm2purc
Automated processing and haplotype inference for double-barcoded PCR amplicons
fluidigm2purc-docker
Docker image for automated build of fluidigm2purc image
gmpi
A growth chamber sensing system using the Raspberry Pi as a platform
hyde
Hybridization detection using phylogenetic invariants
hyde-cnn
Hybridization Detection with Convolutional Neural Networks
hyde-docker
Docker image for automated build of HyDe
hyde_cpp
Legacy version of HyDe in C++
inbreeding-sfs
SFS-Based Demographic Inference with Inbreeding
pblischak.github.io
Research website
phylonetworks.jl
A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks
polyfreqs
polyfreqs: an R package for Bayesian population genomics in autopolyploids
polyfreqs-ms-data
Data, scripts and doc files for polyfreqs manuscript
polyploid-demography
Demographic Inference in Polyploids
polyploid-genotyping
SNP genotyping in polyploids
ppgtk
the polyploid pop-gen toolkit
ppgtk-docker
Dockerfile for PPGtk
pretty-pileup
Pretty Printing for SAMtools Pileups
qcf
Quartet concordance factor estimation
rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
seq-gen
Sequence simulator
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
trim_nds
Trim N's and ?'s from the ends of nucleotide sequences
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