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fomms-2015's Introduction

FOMMS Workshop Topics

In computational chemistry, we spend a lot of time working with computers. However, very few of us have formal training in computer programming. There is little short-term incentive for us to fix this, which has led us to adopt some inefficient programming practices. Some interesting reads on this include Nobody ever gets credit for fixing problems that never happened, Why do many talented scientists write horrible software?, and Why learning to code is so damn hard.

This workshop is designed around the "low-hanging fruit" of best practices - simple fixes that will result in big improvements to your productivity. The topics are admittedly boring, but doing things right will save you from having to think about them again.

Topics we'll cover

Topics we won't cover

How to teach yourself

fomms-2015's People

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fomms-2015's Issues

Don't reinvent the wheel

There have already been lectures on this exact topic, with this repo being highly relevant. It's been curated over multiple uses, so it's likely better than what we could make.

IPython as an example

I like the idea of teaching package managers, file formats, and git, and then showing how the IPython project uses each of these.

Package managers

conda install ipython

File formats

The IPython notebook format is json. Here's an example.

Version control

Here's IPython on github.

Shorten tutorial

The tutorial is only two hours. We should take out the optimization lesson.

Add a profiler data viz tool

I just came across snakeviz, which take profiler code and converts it into an interactive website. Might be worth adding to the optimization section.

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