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Additional Diagnostic options

For this initial developmental version for the FRIERSON compset, a number of configuration option were added for comparative testing. (e.g. optional configurations of PBL calculations, optional PRECIP options). Some of these were removed along the way.
For testing and evaluation, these options should be reintroduced and the ability to select configuration options via namelist should be added.

Adjust Nudging option

Problem:
Nudging was added to the simple version of physpkg.F90 in a manner consistent with the 'full' physics version. It has since been found that the nudging should be applied at the beginning of tphysbc() rather than at the end of tphybc(). So this implementation should have that modification applied.

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