Code Monkey home page Code Monkey logo

marsi's Introduction

marsi - Metabolite Analogues for Rational Strain Improvement

Build Status

marsi is an open-source software to created to identify non-GMO strain design targets

Dependencies

  • eigen3 >= 3.0
  • OpenBabel >= 2.2.3
  • RDKit >= 2016
  • glpk
  • cplex (optional)
  • Cython >= 0.25
  • numpy >= 1.11

Quick Start

  1. Install the Dependencies
  2. pip install marsi
  3. Run marsi --help from the command line

More details in Quick Start

Initialization

marsi comes with a initialization command that will download all the necessary files and build the database. You can start by running marsi db --help.

marsi will download the required files for you, setup the database and process the molecular structures. Just run marsi db init. Make sure you have an stable internet connection.

Documentation

Complete documentation can be found at https://biosustain.github.io/marsi.

License

Apache License Version 2.0

Databases and Software Tools

All tools and databases are listed here

marsi's People

Contributors

the-code-magician avatar pascalaldo avatar phantomas1234 avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.