Comments (3)
Hello @HarukiNakamura,
No worries. Thanks for finding issues and providing suggestions to TransPi. We appreciate it.
You are right, the last column will cause issues since the name has a comma and SOS_busco.py
will fail. I think the easiest solution is what you suggested. I will do a test and modify the code. Thanks!
Best,
Ramón
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Pinging @n-conci
from transpi.
this works:
1517 cat full_table_*.tsv | grep -v "#" | tr "\t" "," | cut -d ',' -f1-5 >.busco_names.txt
1591 cat $transpi_tsv | grep -v "#" | tr "\t" "," | cut -d ',' -f1-5 >>$all_busco
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