Error in process busco4_dist about transpi HOT 3 OPEN

Hello @HarukiNakamura,

No worries. Thanks for finding issues and providing suggestions to TransPi. We appreciate it.

You are right, the last column will cause issues since the name has a comma and SOS_busco.py will fail. I think the easiest solution is what you suggested. I will do a test and modify the code. Thanks!

Best,
Ramón

from transpi.

Pinging @n-conci

from transpi.

this works:

1517                cat full_table_*.tsv | grep -v "#" | tr "\t" "," | cut -d ',' -f1-5 >.busco_names.txt
1591                cat $transpi_tsv | grep -v "#" | tr "\t" "," | cut -d ',' -f1-5 >>$all_busco

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