Comments (2)
sevragorgia
commented on August 19, 2024
Good question, I think the way in which the conda environments are created now changed at some point and TransPi doesn't have one single environment anymore but many for the different applications.
Will check around because the file should be somewhere.
Sergio
from transpi.
sevragorgia
commented on August 19, 2024
I found the .yml file can be found in the TransPi release. I am not sure, why the yml file was removed from the main repo and cannot test with docker in our hpc.
if the yml file is required for the docker image to run as expected, pls let me know so that I can push the file back in. I think I can push.
Sergio
from transpi.
Related Issues (20)
- Error: No module named 'busco' HOT 4
- Error in rRNAfilter and sortmerna
- KEGG warn message HOT 3
- Error Running Full Analysis: Process `fastp (1_R1)` terminated with an error exit status (255) HOT 5
- Process `fastp (Ccelos_S1_L001)` terminated with an error exit status (127) HOT 1
- Transdecoder cannot be found
- Signal P Compatibility Error? HOT 2
- Process fastp (AC422_S687_S14_L001_R) terminated with an error exit status (1)
- Unexpected run time, Trinity/salmon HOT 1
- Process requirement exceed available memory
- problems running full analysis (--all option) and evigene's script
- Operator `into` has been deprecated -- it's not available in DSL2 syntax
- Trinotate preparation step in Precheck script silently fails with missing Perl module
- Uniprot Metazoan database not downloaded due to changes in UniProt REST API HOT 2
- TransPi on HPC failing to pull singularity image HOT 3
- Error executing process > 'transdecoder_predict HOT 1
- line 8: insilico_read_normalization.pl: command not found HOT 5
- Fail to download uniprot_metazoa_33208.fasta HOT 4
- Can I inform the direction of sequencing? HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from transpi.