Comments (3)
Hello @pmoulos,
Can you pull again the repository? It looks like you may have an old version of TransPi. Currently it is in version 1.1.0-rc
and you have v1.0.0-dev
. That may solve this issue. Let me know if this still continues.
Best,
Ramon
from transpi.
Hi @rivera10,
Thanks for the reply! Indeed, the issue regarding the variable name was fixed and the onlyAnn
pipeline was able to continue. However, a problem was caused by the fact that the Trinotate authors updated the help scripts to reflect new download links for Gene Ontology files, so I think that the pipeline crashed because it was not able to build the initial Trinotate SQLite boiler plate. I was able to finish manually based on the reported commands. Maybe you can consider updating Trinotate somehow or maybe this has to do with the respective conda channel?
Thanks again!
from transpi.
Hello @pmoulos,
Thanks for letting me know about the update of Trinotate. I will check and update the links.
Best,
Ramon
from transpi.
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