Comments (3)
rivera10
commented on August 19, 2024
Hello @pmoulos,
Can you pull again the repository? It looks like you may have an old version of TransPi. Currently it is in version 1.1.0-rc and you have v1.0.0-dev. That may solve this issue. Let me know if this still continues.
Best,
Ramon
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pmoulos
commented on August 19, 2024
Hi @rivera10,
Thanks for the reply! Indeed, the issue regarding the variable name was fixed and the onlyAnn pipeline was able to continue. However, a problem was caused by the fact that the Trinotate authors updated the help scripts to reflect new download links for Gene Ontology files, so I think that the pipeline crashed because it was not able to build the initial Trinotate SQLite boiler plate. I was able to finish manually based on the reported commands. Maybe you can consider updating Trinotate somehow or maybe this has to do with the respective conda channel?
Thanks again!
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rivera10
commented on August 19, 2024
Hello @pmoulos,
Thanks for letting me know about the update of Trinotate. I will check and update the links.
Best,
Ramon
from transpi.
Related Issues (20)
- Error in rRNAfilter and sortmerna
- KEGG warn message HOT 3
- Error Running Full Analysis: Process `fastp (1_R1)` terminated with an error exit status (255) HOT 5
- Process `fastp (Ccelos_S1_L001)` terminated with an error exit status (127) HOT 1
- Transdecoder cannot be found
- Signal P Compatibility Error? HOT 2
- Process fastp (AC422_S687_S14_L001_R) terminated with an error exit status (1)
- Unexpected run time, Trinity/salmon HOT 1
- Process requirement exceed available memory
- problems running full analysis (--all option) and evigene's script
- Operator `into` has been deprecated -- it's not available in DSL2 syntax
- Trinotate preparation step in Precheck script silently fails with missing Perl module
- Missing transpi_env.yml HOT 2
- Uniprot Metazoan database not downloaded due to changes in UniProt REST API HOT 2
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- line 8: insilico_read_normalization.pl: command not found HOT 5
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- Can I inform the direction of sequencing? HOT 1
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