This folder contains scripts for processing raw accelerometer data from participants with repeated measurements.

Please note that:

• This code is in active development.
• It is shared as-is to enable scientific reproducibility and 'open science'.
• This code is not shared for the purpose of general use; any use is strictly at your own risk.
• In particular, it is not an authoritative source, and has not been reviewed or tested.

Please share comments, suggestions and errors/bugs found, either directly on the GitHub page or by emailing [email protected].

• Generate command files with generate_command_files.sh
• Generate bash scripts with write_cluster_scripts.py
• Write a submit_all.sh script for each command script directory, as per template_submit_all.sh
• cd to each command script directory and run qsub submit_all.sh
• Note that runs willetts_full and willetts_reduced only run after run walmsley has finished, as all three use the same epoch files.
• Use collate_files.py to collate files into single csv files.