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protein-adjacency-net

Classifier trained to predict whether a protein sequence matches an adjacency network and a GAN trained to fool the classifier.

protein_folding_energy

Scripts for making a "protein folding energy" dataset.

proteinsolver

Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.

pycogent

PyCogent: Official repository for software and unit tests

pymol-psico

Pymol ScrIpt COllection (PSICO)

python-javabridge

Python wrapper for the Java Native Interface

python-markdown-math

Math extension for Python-Markdown

python-ta

rgn

Recurrent Geometric Networks for end-to-end differentiable learning of protein structure

robotframework

Generic test automation framework.

rust-cython-test

Rudimentary example of calling rust from cython

scihub-manuscript

Manuscript for the Sci-Hub Coverage Study

scikit-bio

scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.

sta-663-2016

STA663 Statistical Computing and Computation, Spring 2016

sublime-installer

A Sublime Text Editor Installer made in shell script for the 2.0.1 version

tabipb

This TABIPB repo serves as a submodule to APBS, and also works as a standalone distribution.

tabula-java

Extract tables from PDF files

transvar

TransVar - multiway annotator for precision medicine

uniparc_xml_parser

UniParc dataset describing ~300 million protein sequences converted into relational tables accessible through Google BigQuery (and as Parquet files).

vuepress

📝 Minimalistic Vue-powered static site generator

winter

WInte.r is a Java framework for end-to-end data integration. The WInte.r framework implements well-known methods for data pre-processing, schema matching, identity resolution, data fusion, and result evaluation.

xssp

Create DSSP and HSSP files