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@jcpapp, did you edit index.html in HTML directly? In the long-run, it's probably easier to write in markdown and let github render the HTML (since the HTML will change depending on CSS style choices, etc.).

We had been using OpenMendel with Julia version 0.6.0, but now we want to use the 'Missings' module which requires Julia version 1.0.0 or higher, but when I try to install MendelBase using Julia version 1.0.0, it fails because the GLM module does not work, choking on this line:

using Base.LinAlg.LAPACK: potrf!, potrs!

Any ideas how to fix this?

Thanks,
-- Dan --

           _

_ _ ()_ | Documentation: https://docs.julialang.org
() | () () |
_ _ | | __ _ | Type "?" for help, "]?" for Pkg help.
| | | | | | |/ ` | |
| | || | | | (| | | Version 1.0.0 (2018-08-08)
/ |_'|||_'_| | Official https://julialang.org/ release
|__/ |

julia> using MendelBase
[ Info: Precompiling MendelBase [ad4ee748-342c-5e0b-a1f2-4993d4221618]
ERROR: LoadError: UndefVarError: LinAlg not defined
Stacktrace:
[1] include at ./boot.jl:317 [inlined]
[2] include_relative(::Module, ::String) at ./loading.jl:1038
[3] include(::Module, ::String) at ./sysimg.jl:29
[4] top-level scope at none:2
[5] eval at ./boot.jl:319 [inlined]
[6] eval(::Expr) at ./client.jl:389
[7] top-level scope at ./none:3
in expression starting at /home/weeks/.julia/dev/GLM/src/GLM.jl:5
ERROR: LoadError: Failed to precompile GLM [38e38edf-8417-5370-95a0-9cbb8c7f171a] to /home/weeks/.julia/compiled/v1.0/GLM/6OREG.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] macro expansion at ./logging.jl:313 [inlined]
[3] compilecache(::Base.PkgId, ::String) at ./loading.jl:1184
[4] _require(::Base.PkgId) at ./logging.jl:311
[5] require(::Base.PkgId) at ./loading.jl:852
[6] macro expansion at ./logging.jl:311 [inlined]
[7] require(::Module, ::Symbol) at ./loading.jl:834
[8] include at ./boot.jl:317 [inlined]
[9] include_relative(::Module, ::String) at ./loading.jl:1038
[10] include(::Module, ::String) at ./sysimg.jl:29
[11] top-level scope at none:2
[12] eval at ./boot.jl:319 [inlined]
[13] eval(::Expr) at ./client.jl:389
[14] top-level scope at ./none:3
in expression starting at /home/weeks/.julia/dev/MendelBase/src/MendelBase.jl:11
ERROR: Failed to precompile MendelBase [ad4ee748-342c-5e0b-a1f2-4993d4221618] to /home/weeks/.julia/compiled/v1.0/MendelBase/DpgEd.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] macro expansion at ./logging.jl:313 [inlined]
[3] compilecache(::Base.PkgId, ::String) at ./loading.jl:1184
[4] _require(::Base.PkgId) at ./logging.jl:311
[5] require(::Base.PkgId) at ./loading.jl:852
[6] macro expansion at ./logging.jl:311 [inlined]
[7] require(::Module, ::Symbol) at ./loading.jl:834

julia>

@jcpapp, did you edit index.html in HTML directly? In the long-run, it's probably easier to write in markdown and let github render the HTML (since the HTML will change depending on CSS style choices, etc.).