oicr-gsi Goto Github PK

index-check

injectfastq

Check and inject fastq files

insertsizemetrics

Workflow to run picard InsertSizeMetrics

jq_exporter

longrangerwgs

malta

Interface and tracking for clinical report generation

mavis

MAVIS workflow, annotation of structural variants

medips

MEDIPS - MEthylated DNA ImmunoPrecipitation Sequencing analysis

medips-tools

Scripts for cfMeDIP QC analysis

metagenomicreport

miso-docs-oicr

Moved to https://miso-lims.github.io/walkthroughs

miso-lims

MISO: An open-source LIMS for NGS sequencing centres, now with detailed samples

miso-lims-docker

Docker container for miso-lims

mixcr

MiXCr identifies reads for V, D, J segment genes and quantifies antibody diversity

mixcr_wrapper

mmrdetect

MMRDetect is a mutational signature-based classifier for identifying tumors with mismatch repair deficiency using whole-genome sequencing data.

modeltsne

A t-SNE framework to visualize OMICs data

monitoring-tools

Prometheus base tools for building other projects

mrdetect

workflow to detect Minimal Residual disease with MRDetect

msisensor

msisensor-pro workflow

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

mutagene

a WDL implementation of mutagene signature detection

mutect

Workflow for Mutect1 somatic variant calling

mutect2

Workflow to run Mutect2 (GATK4)

nabu

QC tracking for files via a web service

nanopore-sv-analysis

Structural variant filtering and anlaysis of Nanopore human WGS data.

nanoporecoverageanalysis

Workflow for nanopore coverage analysis, wdl wrapper for snakemake workflow forked from Simpson Lab repo.

nanoporefilterfastq

Workflow for filter nanopore fastq file, wdl wrapper for snakemake workflow forked from Simpson Lab repo.

nanoporemapping

Workflow for nanopore reads mapping, wdl wrapper for snakemake workflow forked from Simpson Lab repo.

nanoporerunsvanalysis

Workflow for running structural variants analysis, wdl wrapper for snakemake workflow forked from Simpson Lab repo.