odavalos Goto Github PK

2016-adv-begin-shell-genomics

Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html

2019-single-cell-rna-sequencing-workshop-ucd_ucsf

2019 single cell RNA sequencing Workshop @ UCD AND UCSF

2020-08-17-ucmerced

Carpentry workshop for GROW

actinn-pytorch

An easy-to-use PyTorch implementation of Automatic Cell-Types Identification of single-cell RNA sequencing using Neural Networks (ACTINN) [Ma et al].

activa

The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective variational autoencoders

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

bioinformaticmixedbag

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

cd8_follicular_analysis

Scripts for reproducing the RNAseq analysis performed in "CD8 follicular T cells localize throughout the follicle during germinal center reactions and maintain cytolytic and helper properties."

conda_binder

Specifying a conda environment with `environment.yml`

data

Data and code behind the articles and graphics at FiveThirtyEight

davalosheydari_scanna

Scripts for scRNAseq preprocessing, data analysis, and figure generation for Davalos & Heydari et al. (2023)

deeplearning-biology

A list of deep learning implementations in biology

deeplearninggroup

A repository for hosting links and resources presented during the Deep Learning Group (Fall 2021).

git-crash-course

Crash course in Unix shell and Git

gse141784_reanalysis

hdmd

:exclamation: This is a read-only mirror of the CRAN R package repository. HDMD — Statistical Analysis Tools for High Dimension Molecular Data (HDMD)

islr-tidymodels-labs

khroma

:art: Colour Schemes for Scientific Data Visualization

machine-learning-book

Code Repository for Machine Learning with PyTorch and Scikit-Learn

manuscript-templates

LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.

merced-weather

Use Github Actions to automatically update a weather graph every day

merced-weather-py

This repository creates a daily updated weather graph using python, and it is a recreation of the merced-weather repository.

n-act

The public repository for N-ACT: An Interpretable Deep Learning Model for Automatic Cell Type and Salient Gene Identification

n-act-trainingscripts

A repository to host the main scripts for training (and pre-training) N-ACT

oneliners

Useful bash one-liners for bioinformatics.

publication_perfect

Six hour hands-on to creating publication-quality plots in R

r

Using R with Jupyter / RStudio on Binder

resume

Software developer resume in Latex

rnaseq-workshop-2017

materials for oct 2017 RNAseq workshop