ntekasi Goto Github PK

cameo

cameo - computer aided metabolic engineering & optimization

cobratoolbox

downstream_cobra

dwm_utils

Tools, wrappers, utilities, and resources for handling single-cell genomics data

fish_split_probe_design

Design target-specific probe pairs for split-HCR and other split encoding probe amplification readouts for FISH.

hiprfish-image-analysis

HiPR-FISH image analysis packages

mattfa

A Matlab implementation of Thermodynamics-based Flux Analysis

meta-scrna-seq

scRNA-seq with unbiased metagenome quantification

metagem

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

openst

Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab

pytfa

A Python 3 implementation of Thermodynamics-based Flux Analysis

redgem

sahmi

saw

seurat-disk

Interfaces for HDF5-based Single Cell File Formats

seutils

Utility functions for Seurat

slide_snake

Snakemake workflow for the preprocessing, alignment, QC, and quantification of SlideSeq data

smta

Spatial meta-transcriptome analysis pipeline

spacemake

spatial_host_microbiome_sequencing

Spatial Host Microbiome sequencing (SHM-seq)

split-seq-pipeline

st_barcodemap

strs

Suite of analysis tools for spatial total RNA-sequencing

tar-scrna-seq

scRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data

yeast-gem

The consensus GEM for Saccharomyces cerevisiae