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forestess

ForestESS simulates plant demographic processes (e.g., growth, reproduction, and mortality), competition for light and soil resources, and soil biogeochemical processes. The codes are from the version of LM3-PPA used to simulate the forest successional dynamics in the paper of Weng, E., Farrior, CE, Dybzinski, R, and Pacala, SW, et al. 2016 Global Change Biology.

gday

GDAY simulates carbon, nitrogen & water dynamics

get_chunk_and_distribute_subdaily

Create subdaily GDAY driving files for Australia using the AWAP data.

get_modis_lai_australia

Get the MODIS LAI (or any...) data for Australia

gimms_iran

Analysis based on 8-km GIMMS NDVI3g (1982-2013) over Iran.

globalregrid_rhwsd

Load and regrid Harmonized World Soil Database in R

gsif_tutorials

Global Soil Information Facilities (tutorials)

gsodtools

R functions to select, download, and process GSOD data.

hadsstr

R Library for working with HadSST Data

kafka

Kascading Fast Kalman Assimilation

leaf-models-public

A public repo to track changes to the various models we use for leaf and the leaf derived applications.

linkages_package

This repository holds fortan and R versions of version 1 of forest gap model LINKAGES (Pastor and Post 1983).

litter-decomp-mapping

Files for working group on using data to create a global litter turnover map

maestra

MAESTRA is a model of forest canopy radiation absorption and photosynthesis. See website, these are some minor changes I have made to the codebase.

mcd10a1

a robust MODIS snow cover and phenology product (Google Earth Engine codebase)

mechanistic-tree-ring

mertools

Convenience functions for working with merMod objects from lme4

meta-analysis-trends

Appendix for Bahn, Vicca et al. 2018

metvurst

meteorological visualisation utilities using R for science and teaching

mimics

MIMICS Code Repository

mixed_model_workshop_2day

mixsiar

A graphical user interface (GUI) for MixSIAR, a Bayesian stable isotope mixing model

mlr

mlr: Machine Learning in R

n2o_thawing_dynamics

A manuscript on N2O emissions following freeze-thaw manipulation

ndvi3gtrendclassification

nee_bayes_model

Bayesian statistical model of NEE response to current and antecedent climate covariates, including determining the antecedent climatic drivers following the stochastic antecedent modeling (SAM) framework.

netcdf.dsg

NetCDF Discrete Sampling Geometry package for R

nn_fluxnet2015

Code accompanying paper "Quantifying soil moisture control on light use efficiency across biomes" (Stocker et al., 2018 New Phytologist).

oekos

Working repository for some scripts for our friends working on top of the mountain.

oneway

Analysis, exploration and visualization of one-way data sets by traditional (e.g., anova) and by bootstrap, permutation, Monte Carlo simulation and Bayesian methods