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View Code? Open in Web Editor NEWDensity of events around objects on a genome
License: Other
Density of events around objects on a genome
License: Other
Density of events around objects == Build == $ make or $ make DEBUG=1 == Run == # bin size: 100bp # number of bins either side of objects: 200 $ ./density_around 100 200 objects.csv events.csv == Notes == Convert ensGene.txt to .bed file: > awk '{print $3"\t"$5"\t"$6"\t"$4}' ensGene.txt > ensGene.bed == Development == Short term goals - none - please suggest some long term - add binary search ? * sort start positions * sort end positions * binary search to find start position in both arrays when looping - probably not -- performance is very good
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