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amicus

The Amicus Metasystem for Interoperation and Combination of UIMA Systems

biomedicus

BioMedICUS: A biomedical and clinical NLP engine.

biomedicus-dlserver

A simple python wsgi application using the Bottle framework to serve downloads while checking NLM UTS licenses for UMLS eligibility.

biomedicus-gpl

GPL licensed extensions for the BioMedICUS project.

biomedicus-measures

A lightweight (small and dependency-free) Java 8 library for identifying and normalizing numbers and measurements in text.

biomedicus-rtf

Implementation of Rich Text Format (RTF) parsing from the Biomedicus text analysis system.

biomedicus-tokenizer

A lightweight (small and dependency-free) Java 8 library for Penn-like tokenization.

biomedicus2

Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.

clinical-sentences

combo_searcher

Apriori implementation to generate exhaustive set of boolean expressions.

dkpro-cassis

UIMA CAS processing library written in Python

icando-surgical-acp

jupyter

Collection of various notebooks

lexical_gazetteer

model-cookbook

modeldeid

De-identification for co-occurrence models

mtap

MTAP: A framework for distributed text analysis using gRPC and microservices-based architecture.

mtap-python-api

Github pages Python API docs for nlpie/mtap.

mtsamples-linguistic

nlp-adapt

Virtual machine that supports NLP workflow to generate and interrogate artifacts from various annotator systems.

nlp-adapt-kube

Kubernetes cluster that supports NLP workflow to generate and interrogate artifacts from various annotator systems.

nlp-ensemble-explorer

A framework for creating and evaluating NLP system ensembles

nlpie.github.io

NLP-IE Group Organization Site

nlptab

A system for integration and visualization of diverse biomedical NLP applications.

nlptab-corpus

The NLP-TAB corpus is a collection of 120 UTF-8 plain text synthetic clinical notes. These notes are sourced from the MTSamples corpus, available in its entirety from www.mtsamples.com.

nlptab-webapp

pier-next

NLP-PIER front-end, controllers, services, APIs

python-tokenizer

restful-tokenizer-api-python-flask

Simple Flask REST API in docker container providing tokenization service

spellgen