nine-sarayut Goto Github PK

sanbomics_scripts

scripts and notebooks from sanbomics

sccode

The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data

scgpt

scib-reproducibility

Additional code and analysis from the single-cell integration benchmarking project

scimpute

Accurate and robust imputation of scRNA-seq data

scmayomap

scntimpute

screenshot-to-code

Drop in a screenshot and convert it to clean code (HTML/Tailwind/React/Vue)

scrna-recom

collected resource for scRNA-seq analysis

scrna.seq.course

Analysis of single cell RNA-seq data course

scrnaseq

scrnaseq-analysis-notes

scRNAseq analysis notes from Ming Tang

scvi-tools

Deep probabilistic analysis of single-cell omics data

scvi-tutorials

Notebooks used in scvi-tools tutorials

sdcmicro

sdcMicro

searchlight2

Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.

self-driving-car

seurat

R toolkit for single cell genomics

seurat_integration_introduction

This script is a modified script from the Seurat Intergration vignette. Adding certain extra features such as merge, split and subset to allow this script to run on older machines with less Ram

shiny-examples

shiny-server

My personal Shiny server

shiny.semantic

Shiny support for powerful Semantic UI library.

shinyapptutorials

a collection of shiny app demonstrations :bar_chart:

shinycell

Shiny Interactive Web Apps for Single-Cell Data

shinyldap

Shiny Ldap Login Client

single-cell-3prime-paper

single-cell-rnaseq-analysis

A guide for analyzing single-cell RNA-seq data using the R package Seurat. Go from raw data to cell clustering, identifying cell types, custom visualizations, and group-wise analysis of tumor infiltrating immune cells using data from Ishizuka et al. Nature 2019.

single-cell-training

SIB course on single cell transcriptomics by mostly using the Seurat pipeline

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

singlecellmultimodal

Single Cell multimodal data scripts for downloading datasets