Update current clinicaDL jupyter-book.

Notebooks are generated from python files stored in the src folder. Automatic generated notebooks are added into the notebooks folder.

To start contributing, start a brand new Conda environment with this command:

make env.conda

Then activate the environment and install depedencies with Poetry:

conda activate ./env
make env.dev

Once installed dependencies. if you want to convert from python files to notebooks just type make build.notebooks. To produce the jupyter-book type make build.book. Remember to activate the conda environment before running these commands.