nickp60 / weird_one_offs Goto Github PK

Here be dragons....

I was curious how many complete genomes had publicly available data associated on the SRA. We do this in 4 stages:

1. Parse NCBI's prokaryotes.txt file, write out Entrez cmds

2. Run all those entrez commands in parallel

3. Parse results

4. Plot results

See the README here to learn more

Click here for a peek at the state of viral metagenome detection from anaerobic digestion:

We did a very informal blind taste test of 14 wines under 7 euro.

The 2018 analysis can be found here

We reviewed 10 wines this year: The new 2019 analysis!

Here I compare 4 phage finding tools

Have you ever wanted to run lots of Texas Hold'em simulations? I have, so I wrote this. One day it might be a shiny app.