Here be dragons....
I was curious how many complete genomes had publicly available data associated on the SRA. We do this in 4 stages:
-
Parse NCBI's
prokaryotes.txt
file, write out Entrez cmds -
Run all those entrez commands in parallel
-
Parse results
-
Plot results
See the README here to learn more
Click here for a peek at the state of viral metagenome detection from anaerobic digestion:
We did a very informal blind taste test of 14 wines under 7 euro.
The 2018 analysis can be found here
We reviewed 10 wines this year: The new 2019 analysis!
Here I compare 4 phage finding tools
Have you ever wanted to run lots of Texas Hold'em simulations? I have, so I wrote this. One day it might be a shiny app.