Comments (2)
You need to separate profiles by comma without any spaces:
nextflow run nf-core/fetchngs -profile test,docker
from fetchngs.
Assuming the fix above resolved the issue. In the future it may be easier to join the #fetchngs channel on nf-core Slack to get real-time help. You can join via the link below:
https://nf-co.re/join
from fetchngs.
Related Issues (20)
- SRAtools download seems to insert paired-end suffix into workdir path HOT 6
- Support .ngc file for dbgap downloads HOT 2
- FEAT: Pass scientific name as input to download the data
- Pipeline fails for large studies HOT 1
- Pipeline crashes if some samples are not available HOT 3
- Use nf-test for input validation
- check out extensions for input files HOT 1
- Add ability to download more than 2 FastQ files via FTP and Aspera HOT 3
- Merge technical replicates (SRR1 + SRR2 -> SRX)
- nf-validation-1.1.3: Operation not supported HOT 20
- `vdb-validate` does not detect file corruption HOT 5
- URGENT: pin nf-validation version HOT 1
- wget host address error HOT 5
- aspera `CONDA_PREFIX` error HOT 1
- Automatic retrieval of input id.csv from test-datasets for test profile HOT 5
- SRA file links deprecated HOT 3
- Support for GSA accessions
- DDBJ study ids (DRP123456) do not map correctly
- Support for CNBG
- SRATOOLS_FASTERQDUMP failing due to missing fastq file HOT 11
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