Comments (3)
babarlelephant
commented on June 11, 2024
Hi, Please get the Ragt13 bat virus https://www.gisaid.org/CoV2020/ which is 96% close to nCov and add it to https://nextstrain.org/groups/blab/sars-like-cov
(the bat virus found in Wuhan's virology institute main paper https://www.biorxiv.org/content/10.1101/2020.01.22.914952v2 )
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tsibley
commented on June 11, 2024
@acx01b Thanks for your interest! I think your request is more suitable for the https://github.com/blab/sars-like-cov repository, which is what is used to produce https://nextstrain.org/groups/blab/sars-like-cov. This repository is for https://nextstrain.org/ncov. I'd encourage you to see if you can adapt the build there to include the bat virus you mention.
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trvrb
commented on June 11, 2024
Resolved in #50.
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Related Issues (20)
- ENH: Reconstruct Nextclade Pango Lineage on internal nodes
- ENH: Simple reversion coloring to allow inspection of interesting/problematic parts of tree
- Discussion: Do we still need the `snp_clusters` param for `diagnostics` rule? HOT 3
- ENH: Make trial build URLs real, not require replacement HOT 1
- Proposal: elevate BN.1 as 22G HOT 2
- after skip_diagnostics: true modification. next strain fails HOT 3
- Proposal: elevate XBB.1.5 as 22G HOT 2
- PermissionError: [Errno 13] Permission denied: '.snakemake' HOT 3
- download the Frequencies (colored by Clade ) HOT 1
- Deduplication metadata fails HOT 6
- dev: Document example accepted docker image formats for action HOT 2
- Query Contains a Column That Does Not Exist in Metadata. HOT 5
- can't install to native HOT 4
- Why use unaligned sequences as "aligned" input instead of the actually aligned sequences? HOT 5
- botocore/boto3 SSL certificate error when using self-signed certificates HOT 1
- tests/different-inputs.t is outdated and unused HOT 1
- Proposal: elevate XBB.1.9 as 23C HOT 6
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- ValueError: Fasta file appears to have sequences of different lengths! HOT 4
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