Comments (1)
No difference, please see the Optional part at QUICK RUN
section in the main page.
The first strategy is to do the alignment by yourself, another is to use the NextPolish pipeline to do the alignment.
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Related Issues (20)
- Reduction in genome size after polishing HOT 3
- how to deal with "N" HOT 1
- Polish with raw or corrected ONT reads? HOT 1
- NextPolish slurmstepd: error: JOB CANCELLED DUE TO TIME LIMIT HOT 6
- Using Illumina Hi-C and Chicago data? HOT 4
- How to use Nextpolish on NextDenovo draft assembly HOT 2
- Need information related to example given in NextPolish Software under the folder test_data HOT 4
- MissAssembly Correction using NextPolish (Need Suggestions) HOT 1
- nextpolish2.py never stop HOT 6
- Adding Hisat2 instead of BWA HOT 1
- error of generate_lqseqs_from_cluster HOT 3
- repeat regions HOT 5
- Empty bin directory after installation? HOT 2
- User defined alignment pipeline for short- and long-reads HOT 2
- [question] combine with medaka or not? HOT 3
- run nextplolish2.py sleep HOT 8
- Ignore the secondary alignment HOT 2
- Test run failed at map_genome: "[gzclose] buffer error" HOT 3
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- Why there is no stats about changes when polished with nextpolish1.py or nextpolish2.py HOT 1
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