Comments (3)
Check whether the scaffold number of the raw genome and the polished genome is the same? If it is the same, that means the raw genome contains more insertion errors than deletion errors.
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You can do some assessments, such as busco score or mapping RNA-SEQ data.
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Related Issues (20)
- how to deal with "N" HOT 1
- Polish with raw or corrected ONT reads? HOT 1
- NextPolish 1.4.0 does not complile with GCC 10 (under Debian 11) HOT 3
- unable to create files for use for nextpolish.py from a offline method HOT 4
- Some question about pacbio hifi data polish HOT 6
- Can I use the RNAseq data for genome polishing? HOT 2
- Errors with nextPolish.sh.e HOT 8
- Unable to run nextpolish program HOT 3
- db split1 issue HOT 6
- How long and how much memory should NextPolish require? HOT 4
- No seq_split in new download HOT 5
- slurm_submit_batch_job error HOT 1
- db_split errors HOT 1
- How NextPolish v1.4 treat gap in genome ? HOT 1
- Polish only INDELs or only SNPs, and polishing thresholds HOT 1
- NextPolish license and distribution of source code HOT 1
- ImportError HOT 4
- gap filling effects? HOT 2
- Why there is no stats about changes when polished with nextpolish1.py or nextpolish2.py HOT 1
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