neurita / neuro_docker Goto Github PK
View Code? Open in Web Editor NEWA Dockerfile to create a Ubuntu docker for neuroimaging
License: MIT License
A Dockerfile to create a Ubuntu docker for neuroimaging
License: MIT License
docker build -t="dockerfile/neuro" .
/bin/sh: locale-gen: command not found
The command '/bin/sh -c echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen && locale-gen en_US.utf8 && /usr/sbin/update-locale LANG=en_US.UTF-8' returned a non-zero code: 127
Easy to solve, uncommenting apt-get -y install apt-utils locales
, wait for my PR
I am running Docker Version 18.06.1-ce-mac73.
The build fails at step 43 for me with the following error:
Running hooks in /etc/ca-certificates/update.d...
done.
--2018-10-02 17:07:45-- http://neuro.debian.net/lists/xenial.de-m.full
Resolving neuro.debian.net (neuro.debian.net)... 129.170.30.193
Connecting to neuro.debian.net (neuro.debian.net)|129.170.30.193|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 258
Saving to: ‘STDOUT’
0K 100% 6.93M=0s
2018-10-02 17:07:45 (6.93 MB/s) - written to stdout [258/258]
deb http://neurodebian.g-node.org data main contrib non-free
#deb-src http://neurodebian.g-node.org data main contrib non-free
deb http://neurodebian.g-node.org xenial main contrib non-free
#deb-src http://neurodebian.g-node.org xenial main contrib non-free
Executing: /tmp/tmp.O3iLDwevT2/gpg.1.sh --recv-keys
--keyserver
hkp://pool.sks-keyservers.net:80
0xA5D32F012649A5A9
gpg: requesting key 2649A5A9 from hkp server pool.sks-keyservers.net
gpgkeys: key A5D32F012649A5A9 can't be retrieved
gpg: no valid OpenPGP data found.
gpg: Total number processed: 0
gpg: keyserver communications error: keyserver helper general error
gpg: keyserver communications error: unknown pubkey algorithm
gpg: keyserver receive failed: unknown pubkey algorithm
The command '/bin/sh -c chown -R $BASICUSER $HOME && echo "export SOFT=\$HOME/soft" >> $BASHRC && echo "source /etc/fsl/5.0/fsl.sh" >> $BASHRC && echo "export FSLPARALLEL=condor" >> $BASHRC && apt-get update && apt-get install -y wget bzip2 unzip htop curl git && wget -O- $NEURODEBIAN_URL | tee /etc/apt/sources.list.d/neurodebian.sources.list && apt-key adv --recv-keys --keyserver hkp://pool.sks-keyservers.net:80 0xA5D32F012649A5A9 && sed -i 's/# \(.*multiverse$\)/\1/g' /etc/apt/sources.list && echo 'deb-src http://archive.ubuntu.com/ubuntu xenial main restricted' | tee /etc/apt/sources.list && apt-get update && apt-get -y upgrade && apt-get install -y apt-utils locales cmake gcc-4.9 g++-4.9 gfortran-4.9 gcc-5 g++-5 gfortran-5 tcsh libjpeg62 libxml2-dev libxslt1-dev dicomnifti dcm2niix xdot fsl-5.0-eddy-nonfree fsl-5.0-core && rm -rf /var/lib/apt/lists/* && update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-5 90 --slave /usr/bin/g++ g++ /usr/bin/g++-5 && update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-4.9 80 --slave /usr/bin/g++ g++ /usr/bin/g++-4.9 && apt-get build-dep vtk6' returned a non-zero code: 2
This is my first time building a docker image: not sure how to got about debugging.
Hi!
I discover your docker in BraincHack Bilbao (thanks to Asier and Ibai ;) ).
I have installed docker and all tools operating, but files and directories I transferred from my local machine (with docker run -it -v <host_path>:<guest_path> dockerfile/neuro) appear in black in the terminal (Basic, Homebrew, Gras....all of them). Attached is a snapshot show them.
Do you know how can I solve that?
OSX 10.11.6
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