nespinoza / exonailer Goto Github PK

Hi there,
I had trouble installing exonailer because of the automatic installation of the external modules. The failed with exit code 1 was not very helpful to work out why it failed.

(azores)) [jneal@localhost exonailer]$ python install.py
> Numpy is ok!
> Scipy is ok!
> Astropy is ok!
> batman is ok!
> emcee is ok!
> C code found in directory utilities/ajplanet. Building...
----------------------------------------------------------
> ERROR: exonailer couldn't be installed.
> Problem building code in utilities/ajplanet. The error was:

    error: Command "gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I./ -I/usr/local/include -Ibuild/src.linux-x86_64-2.7 -I/home/jneal/miniconda3/envs/azores/lib/python2.7/site-packages/numpy/core/include -I/home/jneal/miniconda3/envs/azores/include/python2.7 -c ./true_anomaly.c -o build/temp.linux-x86_64-2.7/true_anomaly.o" failed with exit status 1

After trying to build ajplanet manually I recovered this error.

((azores)) [jneal@localhost ajplanet]$ make
gcc -c true_anomaly.c -I/usr/local/include
true_anomaly.c:3:25: fatal error: gsl/gsl_math.h: No such file or directory
compilation terminated.
Makefile:19: recipe for target 'true_anomaly.o' failed
make: *** [true_anomaly.o] Error 1

Which revealed that I was missing the GNU scientific library (gsl).

It would be helpful if gsl was added to the requirements list. Or that the error message could return the error message from ajplanet which would have easily shown that gsl was missing.

Thanks Jason

Traceback (most recent call last):
File "exonailer.py", line 5, in
import data_utils
File "utilities/data_utils.py", line 195, in
import Wavelets
File "utilities/Wavelets.py", line 3, in
import FWT
ImportError: No module named FWT

What is FWT module? is it from GSL?
I already install gsl in my Ubuntu 16.04 using "sudo apt-get install libgsl2 libgsl-dev"

I followed all the steps for the installation (I got all the libraries needed and ran install.py), but when I tried to run exonailer.py I got this error:

Traceback (most recent call last):
File "exonailer.py", line 26, in
t_tr,phases,f, f_err,transit_instruments = data_utils.pre_process(t_tr,f,f_err,options,transit_instruments,parameters)
AttributeError: 'module' object has no attribute 'pre_process'

Do you know what could it be? I'm running all this in an environment with Python 2 and I have tried a lot of things but I can't run it.

Thanks in advance.

Hi,

I noticed you import urllib and tarfile on install.py but it's never used. Do you think you can remove them?

Also, would you be interested in a pull request with a distutils-type installation with a setup.py?
That way installation would go as

python setup.py install